Yang Liu

Cang, H., Liu, Y., & Xing, J. (2024). Mosaic-PICASSO: accurate crosstalk removal for multiplex fluorescence imaging. Bioinformatics, 40(1).Oxford University Press (OUP). doi: 10.1093/bioinformatics/btad784.

Liu, Y., & Uttam, S. (2024). Perspective on quantitative phase imaging to improve precision cancer medicine. J Biomed Opt, 29(Suppl 2), S22705.SPIE-Intl Soc Optical Eng. doi: 10.1117/1.JBO.29.S2.S22705.

Ma, F., Akolkar, H., Xu, J., Liu, Y., Popova, D., Xie, J., Youssef, M.M., Benosman, R., Hart, R.P., & Herrup, K. (2023). The Amyloid Precursor Protein Modulates the Position and Length of the Axon Initial Segment. JOURNAL OF NEUROSCIENCE, 43(10), 1830-1844.Society for Neuroscience. doi: 10.1523/JNEUROSCI.0172-22.2023.

Han, L., Mich-Basso, J.D., Li, Y., Ammanamanchi, N., Xu, J., Bargaje, A.P., Liu, H., Wu, L., Jeong, J.H., Franks, J., Stolz, D.B., Wu, Y.L., Rajasundaram, D., Liu, Y., & Kuhn, B. (2022). Changes in nuclear pore numbers control nuclear import and stress response of mouse hearts. DEVELOPMENTAL CELL, 57(20), 2397-+.Elsevier BV. doi: 10.1016/j.devcel.2022.09.017.

Skoko, J.J., Cao, J., Gaboriau, D., Attar, M., Asan, A., Hong, L., Paulsen, C.E., Ma, H., Liu, Y., Wu, H., Harkness, T., Furdui, C.M., Manevich, Y., Morrison, C.G., Brown, E.T., Normolle, D., Spies, M., Spies, M.A., Carroll, K., & Neumann, C.A. (2022). Redox regulation of RAD51 Cys319 and homologous recombination by peroxiredoxin 1. REDOX BIOLOGY, 56, 102443.Elsevier BV. doi: 10.1016/j.redox.2022.102443.

Thota, P.N., Nasibli, J., Kumar, P., Sanaka, M.R., Chak, A., Zhang, X., Liu, X., Uttam, S., & Liu, Y. (2022). Prediction of neoplastic progression in Barrett's esophagus using nanoscale nuclear architecture mapping: a pilot study. GASTROINTESTINAL ENDOSCOPY, 95(6), 1239-1246.Elsevier BV. doi: 10.1016/j.gie.2022.01.007.

Xu, J., Sun, X., Kim, K., Brand, R.M., Hartman, D., Ma, H., Brand, R.E., Bai, M., & Liu, Y. (2022). Ultrastructural visualization of chromatin in cancer pathogenesis using a simple small-molecule fluorescent probe. SCIENCE ADVANCES, 8(9), eabm8293.American Association for the Advancement of Science (AAAS). doi: 10.1126/sciadv.abm8293.

Ma, H., & Liu, Y. (2021). Robust emitter localization with enhanced harmonic analysis. OPTICS LETTERS, 46(23), 5798-5801.Optica Publishing Group. doi: 10.1364/OL.437409.

Ma, H., & Liu, Y. (2021). Embedded nanometer position tracking based on enhanced phasor analysis (vol 46, pg 3825, 2021). OPTICS LETTERS, 46(18), 4639.Optica Publishing Group. doi: 10.1364/OL.440217.

Ma, H., & Liu, Y. (2021). Embedded nanometer position tracking based on enhanced phasor analysis. OPTICS LETTERS, 46(16), 3825-3828.Optica Publishing Group. doi: 10.1364/OL.433740.

Ma, H., & Liu, Y. (2021). Super-Resolution Imaging through Single-Molecule Localization. In Biomedical Optical Imaging. AIP Publishing LLCMelville, New York. doi: 10.1063/9780735423794_004.

Ma, H., Jiang, W., Xu, J., & Liu, Y. (2021). Enhanced super-resolution microscopy by extreme value based emitter recovery. SCIENTIFIC REPORTS, 11(1), 20417.Springer Science and Business Media LLC. doi: 10.1038/s41598-021-00066-3.

Mela, C.A., & Liu, Y. (2021). Application of convolutional neural networks towards nuclei segmentation in localization-based super-resolution fluorescence microscopy images. BMC BIOINFORMATICS, 22(1), 325.Springer Science and Business Media LLC. doi: 10.1186/s12859-021-04245-x.

Xiang, Y., Sang, Z., Bitton, L., Xu, J., Liu, Y., Schneidman-Duhovny, D., & Shi, Y. (2021). Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies. CELL SYSTEMS, 12(3), 220-+.Elsevier BV. doi: 10.1016/j.cels.2021.01.003.

Xu, J., & Liu, Y. (2021). Probing Chromatin Compaction and Its Epigenetic States in situ With Single-Molecule Localization-Based Super-Resolution Microscopy. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 9, 653077.Frontiers Media SA. doi: 10.3389/fcell.2021.653077.

Ma, H., & Liu, Y. (2020). Super-resolution localization microscopy: Toward high throughput, high quality, and low cost. APL PHOTONICS, 5(6).AIP Publishing. doi: 10.1063/5.0011731.

Ma, H., Wang, P., Shang, D., & Liu, Y. (2020). Spatial-domain low-coherence quantitative phase microscopy to improve the cytological diagnosis of pancreatic cancer. JOURNAL OF INVESTIGATIVE MEDICINE, 68(1), 60-67.SAGE Publications. doi: 10.1136/jim-2019-000997.

Troy, K., Liu, Y., & Hainer, S.J. (2020). PathSTORM: a road to early cancer detection. Mol Cell Oncol, 7(5), 1776086.Informa UK Limited. doi: 10.1080/23723556.2020.1776086.

Xu, J., Ma, H., & Liu, Y. (2020). Optimized Stochastic Optical Reconstruction Microscopy for Imaging Chromatin Structure in Pathological Tissue. Curr Protoc Cytom, 94(1), e78.Wiley. doi: 10.1002/cpcy.78.

Xu, J., Ma, H., Ma, H., Jiang, W., Mela, C.A., Duan, M., Zhao, S., Gao, C., Hahm, E.R., Lardo, S.M., Troy, K., Sun, M., Pai, R., Stolz, D.B., Zhang, L., Singh, S., Brand, R.E., Hartman, D.J., Hu, J., Hainer, S.J., & Liu, Y. (2020). Super-resolution imaging reveals the evolution of higher-order chromatin folding in early carcinogenesis. NATURE COMMUNICATIONS, 11(1), 1899.Springer Science and Business Media LLC. doi: 10.1038/s41467-020-15718-7.

Liu, Y., & Xu, J. (2019). High-resolution microscopy for imaging cancer pathobiology. Curr Pathobiol Rep, 7(3), 85-96.Springer Science and Business Media LLC. doi: 10.1007/s40139-019-00201-w.

Ma, H., Xu, J., & Liu, Y. (2019). WindSTORM: Robust online image processing for high-throughput nanoscopy. SCIENCE ADVANCES, 5(4), eaaw0683.American Association for the Advancement of Science (AAAS). doi: 10.1126/sciadv.aaw0683.

Nmezi, B., Xu, J., Fu, R., Armiger, T.J., Rodriguez-Bey, G., Powell, J.S., Ma, H., Sullivan, M., Tu, Y., Chen, N.Y., Young, S.G., Stolz, D.B., Dahl, K.N., Liu, Y., & Padiath, Q.S. (2019). Concentric organization of A- and B-type lamins predicts their distinct roles in the spatial organization and stability of the nuclear lamina. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(10), 4307-4315.Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.1810070116.

Uttam, S., Hashash, J.G., LaFace, J., Binion, D., Regueiro, M., Hartmann, D.J., Brand, R.E., & Li, Y. (2019). Three-Dimensional Nanoscale Nuclear Architecture Mapping of Rectal Biopsies Detects Colorectal Neoplasia in Patients with Inflammatory Bowel Disease. CANCER PREVENTION RESEARCH, 12(8), 527-538.American Association for Cancer Research (AACR). doi: 10.1158/1940-6207.CAPR-19-0024.

Xu, J., & Liu, Y. (2019). A guide to visualizing the spatial epigenome with super-resolution microscopy. FEBS JOURNAL, 286(16), 3095-3109.Wiley. doi: 10.1111/febs.14938.

Xu, J., & Liu, Y. (2019). Imaging Higher-order Chromatin Structures in Single Cells Using Stochastic Optical Reconstruction Microscopy. Bio Protoc, 9(3).Bio-Protocol, LLC. doi: 10.21769/BioProtoc.3160.

Gao, Y., Tan, J., Jin, J., Ma, H., Chen, X., Leger, B., Xu, J., Spagnol, S.T., Dahl, K.N., Levine, A.S., Liu, Y., & Lan, L. (2018). SIRT6 facilitates directional telomere movement upon oxidative damage. SCIENTIFIC REPORTS, 8(1), 5407.Springer Science and Business Media LLC. doi: 10.1038/s41598-018-23602-0.

Teng, Y., Yadav, T., Duan, M., Tan, J., Xiang, Y., Gao, B., Xu, J., Liang, Z., Liu, Y., Nakajima, S., Shi, Y., Levine, A.S., Zou, L., & Lan, L. (2018). ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB. NATURE COMMUNICATIONS, 9(1), 4115.Springer Science and Business Media LLC. doi: 10.1038/s41467-018-06586-3.

Uttam, S., & Liu, Y. (2018). Fourier phase based depth-resolved nanoscale nuclear architecture mapping for cancer detection. METHODS, 136, 134-151.Elsevier BV. doi: 10.1016/j.ymeth.2017.10.011.

Xu, J., Ma, H., Jin, J., Uttam, S., Fu, R., Huang, Y., & Liu, Y. (2018). Super-Resolution Imaging of Higher-Order Chromatin Structures at Different Epigenomic States in Single Mammalian Cells. CELL REPORTS, 24(4), 873-882.Elsevier BV. doi: 10.1016/j.celrep.2018.06.085.

Gao, Y., Li, C., Wei, L., Teng, Y., Nakajima, S., Chen, X., Xu, J., Legar, B., Ma, H., Spagnol, S.T., Wan, Y., Dahl, K.N., Liu, Y., Levine, A.S., & Lan, L. (2017). SSRP1 Cooperates with PARP and XRCC1 to Facilitate Single-Strand DNA Break Repair by Chromatin Priming. CANCER RESEARCH, 77(10), 2674-2685.American Association for Cancer Research (AACR). doi: 10.1158/0008-5472.CAN-16-3128.

Ma, H., Fu, R., Xu, J., & Liu, Y. (2017). A simple and cost-effective setup for super-resolution localization microscopy. SCIENTIFIC REPORTS, 7(1), 1542.Springer Science and Business Media LLC. doi: 10.1038/s41598-017-01606-6.

Ma, H., Xu, J., Jin, J., Huang, Y., & Liu, Y. (2017). A Simple Marker-Assisted 3D Nanometer Drift Correction Method for Superresolution Microscopy. BIOPHYSICAL JOURNAL, 112(10), 2196-2208.Elsevier BV. doi: 10.1016/j.bpj.2017.04.025.

Xu, J., Ma, H., & Liu, Y. (2017). Stochastic Optical Reconstruction Microscopy (STORM). Curr Protoc Cytom, 81(1), 12.46.1-12.46.27.Wiley. doi: 10.1002/cpcy.23.

Pham, H.V., Pantanowitz, L., & Liu, Y. (2016). Quantitative phase imaging to improve the diagnostic accuracy of urine cytology. CANCER CYTOPATHOLOGY, 124(9), 641-650.Wiley. doi: 10.1002/cncy.21734.

Del Portillo, A., Lagana, S.M., Yao, Y., Uehara, T., Jhala, N., Ganguly, T., Nagy, P., Gutierrez, J., Luna, A., Abrams, J., Liu, Y., Brand, R., Sepulveda, J.L., Falk, G.W., & Sepulveda, A.R. (2015). Evaluation of Mutational Testing of Preneoplastic Barrett's Mucosa by Next-Generation Sequencing of Formalin-Fixed, Paraffin-Embedded Endoscopic Samples for Detection of Concurrent Dysplasia and Adenocarcinoma in Barrett's Esophagus. JOURNAL OF MOLECULAR DIAGNOSTICS, 17(4), 412-419.Elsevier BV. doi: 10.1016/j.jmoldx.2015.02.006.

Glassford, W.J., Johnson, W.C., Dall, N.R., Smith, S.J., Liu, Y., Boll, W., Noll, M., & Rebeiz, M. (2015). Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty. DEVELOPMENTAL CELL, 34(5), 520-531.Elsevier BV. doi: 10.1016/j.devcel.2015.08.005.

Ma, H., Xu, J., Jin, J., Gao, Y., Lan, L., & Liu, Y. (2015). Fast and Precise 3D Fluorophore Localization based on Gradient Fitting. SCIENTIFIC REPORTS, 5(1), 14335.Springer Science and Business Media LLC. doi: 10.1038/srep14335.

Sun, L., Tan, R., Xu, J., LaFace, J., Gao, Y., Xiao, Y., Attar, M., Neumann, C., Li, G.M., Su, B., Liu, Y., Nakajima, S., Levine, A.S., & Lan, L. (2015). Targeted DNA damage at individual telomeres disrupts their integrity and triggers cell death. NUCLEIC ACIDS RESEARCH, 43(13), 6334-6347.Oxford University Press (OUP). doi: 10.1093/nar/gkv598.

Uttam, S., & Liu, Y. (2015). Fourier phase in Fourier-domain optical coherence tomography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 32(12), 2286-2306.Optica Publishing Group. doi: 10.1364/JOSAA.32.002286.

Uttam, S., Pham, H.V., LaFace, J., Leibowitz, B., Yu, J., Brand, R.E., Hartman, D.J., & Liu, Y. (2015). Early Prediction of Cancer Progression by Depth-Resolved Nanoscale Mapping of Nuclear Architecture from Unstained Tissue Specimens. CANCER RESEARCH, 75(22), 4718-4727.American Association for Cancer Research (AACR). doi: 10.1158/0008-5472.CAN-15-1274.

Hartman, D.J.J., Krasinskas, A.M.M., Uttam, S., Staton, K., Bista, R., Rizvi, S., Slivka, A., Brand, R., & Liu, Y. (2014). Assessment of Nuclear Nanomorphology Marker to Improve the Detection of Malignancy From Bile Duct Biopsy Specimens. AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 141(6), 884-891.Oxford University Press (OUP). doi: 10.1309/AJCPXQD0NSJNK0CX.

Liu, Y., Uttam, S., Alexandrov, S., & Bista, R.K. (2014). Investigation of nanoscale structural alterations of cell nucleus as an early sign of cancer. BMC BIOPHYSICS, 7(1), 1.Springer Science and Business Media LLC. doi: 10.1186/2046-1682-7-1.

Fasanella, K.E., Bista, R.K., Staton, K., Rizvi, S., Uttam, S., Zhao, C., Sepulveda, A., Brand, R.E., McGrath, K., & Liu, Y. (2013). Nuclear Nano-architecture Markers of Gastric Cardia and Upper Squamous Esophagus Detect Esophageal Cancer "Field Effect". JOURNAL OF CANCER, 4(8), 626-634.Ivyspring International Publisher. doi: 10.7150/jca.6990.

Uttam, S., Alexandrov, S.A., Bista, R.K., & Liu, Y. (2013). Tomographic imaging via spectral encoding of spatial frequency. OPTICS EXPRESS, 21(6), 7488-7504.The Optical Society. doi: 10.1364/OE.21.007488.

Uttam, S., Bista, R.K., Staton, K., Alexandrov, S., Choi, S., Bakkenist, C.J., Hartman, D.J., Brand, R.E., & Liu, Y. (2013). Investigation of depth-resolved nanoscale structural changes in regulated cell proliferation and chromatin decondensation: erratum (vol 4, pg 596, 2013). BIOMEDICAL OPTICS EXPRESS, 4(11), 2491.The Optical Society. doi: 10.1364/BOE.4.002491.

Uttam, S., Bista, R.K., Staton, K., Alexandrov, S., Choi, S., Bakkenist, C.J., Hartman, D.J., Brand, R.E., & Liu, Y. (2013). Investigation of depth-resolved nanoscale structural changes in regulated cell proliferation and chromatin decondensation. BIOMEDICAL OPTICS EXPRESS, 4(4), 596-613.The Optical Society. doi: 10.1364/BOE.4.000596.

Wu, D., He, D., Qiu, J., Lin, R., & Liu, Y. (2013). Comparing social tags with subject headings on annotating books: A study comparing the information science domain in English and Chinese. JOURNAL OF INFORMATION SCIENCE, 39(2), 169-187.SAGE Publications. doi: 10.1177/0165551512451808.

Alexandrov, S.A., Uttam, S., Bista, R.K., Staton, K., & Liu, Y. (2012). Spectral encoding of spatial frequency approach for characterization of nanoscale structures. APPLIED PHYSICS LETTERS, 101(3), 33702.AIP Publishing. doi: 10.1063/1.4737209.

Alexandrov, S.A., Uttam, S., Bista, R.K., Zhao, C., & Liu, Y. (2012). Real-time quantitative visualization of 3D structural information. OPTICS EXPRESS, 20(8), 9203-9214.The Optical Society. doi: 10.1364/OE.20.009203.

Bista, R.K., Uttam, S., Hartman, D.J., Qiu, W., Yu, J., Zhang, L., Brand, R.E., & Liu, Y. (2012). Investigation of nuclear nano-morphology marker as a biomarker for cancer risk assessment using a mouse model. JOURNAL OF BIOMEDICAL OPTICS, 17(6), 066014.SPIE-Intl Soc Optical Eng. doi: 10.1117/1.JBO.17.6.066014.

Bista, R.K., Wang, P., Bhargava, R., Uttam, S., Hartman, D.J., Brand, R.E., & Liu, Y. (2012). Nuclear nano-morphology markers of histologically normal cells detect the "field effect" of breast cancer. BREAST CANCER RESEARCH AND TREATMENT, 135(1), 115-124.Springer Science and Business Media LLC. doi: 10.1007/s10549-012-2125-2.

Chen, Y., Liang, C.P., Liu, Y., Fischer, A.H., Parwani, A.V., & Pantanowitz, L. (2012). Review of advanced imaging techniques. J Pathol Inform, 3(1), 22.Elsevier BV. doi: 10.4103/2153-3539.96751.

Alexandrov, S.A., Uttam, S., Bista, R.K., & Liu, Y. (2011). Spectral contrast imaging microscopy. OPTICS LETTERS, 36(17), 3323-3325.The Optical Society. doi: 10.1364/OL.36.003323.

Bista, R.K., Brentnall, T.A., Bronner, M.P., Langmead, C.J., Brand, R.E., & Liu, Y. (2011). Using Optical Markers of Nondysplastic Rectal Epithelial Cells to Identify Patients with Ulcerative Colitis-associated Neoplasia. INFLAMMATORY BOWEL DISEASES, 17(12), 2427-2435.Oxford University Press (OUP). doi: 10.1002/ibd.21639.

Bista, R.K., Uttam, S., Wang, P., Staton, K., Choi, S., Bakkenist, C.J., Hartman, D.J., Brand, R.E., & Liu, Y. (2011). Quantification of nanoscale nuclear refractive index changes during the cell cycle. JOURNAL OF BIOMEDICAL OPTICS, 16(7), 070503.SPIE-Intl Soc Optical Eng. doi: 10.1117/1.3597723.

Fang, C., Brokl, D., Brand, R.E., & Liu, Y. (2011). Depth-selective fiber-optic probe for characterization of superficial tissue at a constant physical depth. BIOMEDICAL OPTICS EXPRESS, 2(4), 838-849.The Optical Society. doi: 10.1364/BOE.2.000838.

Rizvi, S., Davison, J.M., Bista, R.K., Wang, P., Holinga, J., Staton, K.D., Hartman, D.I., Brand, R., Fasanella, K.E., Liu, Y., & McGrath, K. (2011). Nuclear Refractive Index Properties of Non-Dysplastic Metaplastic Cells to Detect the Presence of Esophageal High-Grade Dysplasia and Adenocarcinoma From Barrett's Esophagus. GASTROENTEROLOGY, 140, (p. S217).

Uttam, S., Bista, R.K., Hartman, D.J., Brand, R.E., & Liu, Y. (2011). Correction of stain variations in nuclear refractive index of clinical histology specimens. JOURNAL OF BIOMEDICAL OPTICS, 16(11), 116013.SPIE-Intl Soc Optical Eng. doi: 10.1117/1.3650306.

Mahmoud, B.H., Ruvolo, E., Hexsel, C.L., Liu, Y., Owen, M.R., Kollias, N., Lim, H.W., & Hamzavi, I.H. (2010). Impact of Long-Wavelength UVA and Visible Light on Melanocompetent Skin. JOURNAL OF INVESTIGATIVE DERMATOLOGY, 130(8), 2092-2097.Elsevier BV. doi: 10.1038/jid.2010.95.

Wang, P., Bista, R., Bhargava, R., Brand, R.E., & Liu, Y. (2010). Spatial-domain low-coherence quantitative phase microscopy for cancer diagnosis. OPTICS LETTERS, 35(17), 2840-2842.The Optical Society. doi: 10.1364/ol.35.002840.

Wang, P., Bista, R.K., Khalbuss, W.E., Qiu, W., Uttam, S., Staton, K., Zhang, L., Brentnall, T.A., Brand, R.E., & Liu, Y. (2010). Nanoscale nuclear architecture for cancer diagnosis beyond pathology via spatial-domain low-coherence quantitative phase microscopy. JOURNAL OF BIOMEDICAL OPTICS, 15(6), 066028.SPIE-Intl Soc Optical Eng. doi: 10.1117/1.3523618.

Wang, P., Bista, R.K., Qiu, W., Khalbuss, W.E., Zhang, L., Brand, R.E., & Liu, Y. (2010). An insight into statistical refractive index properties of cell internal structure via low-coherence statistical amplitude microscopy. OPTICS EXPRESS, 18(21), 21950-21958.Optica Publishing Group. doi: 10.1364/OE.18.021950.

Backman, V., Subramanian, H., Pradhan, P., Liu, Y., Capoglu, I., Rogers, J.D., Roy, H.K., & Taflove, A. (2009). Detecting alterations in cell ultrastructure with optical imaging. Annu Int Conf IEEE Eng Med Biol Soc, 2009, 6325-6326.IEEE. doi: 10.1109/IEMBS.2009.5333173.

Subramanian, H., Pradhan, P., Liu, Y., Capoglu, I.R., Rogers, J.D., Roy, H.K., Brand, R.E., & Backman, V. (2009). Partial-wave microscopic spectroscopy detects subwavelength refractive index fluctuations: an application to cancer diagnosis. OPTICS LETTERS, 34(4), 518-520.Optica Publishing Group. doi: 10.1364/OL.34.000518.

Roy, H.K., Turzhitsky, V., Kim, Y.L., Goldberg, M.J., Muldoon, J.P., Liu, Y., Brand, R.E., Hall, C., Hasabou, N., Jameel, M., & Backman, V. (2008). Spectral slope from the endoscopically-normal mucosa predicts concurrent colonic neoplasia:: A pilot Ex-Vivo clinical study. DISEASES OF THE COLON & RECTUM, 51(9), 1381-1386.Ovid Technologies (Wolters Kluwer Health). doi: 10.1007/s10350-008-9384-3.

Subramanian, H., Pradhan, P., Liu, Y., Capoglu, I.R., Li, X., Rogers, J.D., Heifetz, A., Kunte, D., Roy, H.K., Taflove, A., & Backman, V. (2008). Optical methodology for detecting histologically unapparent nanoscale consequences of genetic alterations in biological cells. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(51), 20118-20123.Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.0804723105.

Turzhitsky, V., Liu, Y., Hasabou, N., Goldberg, M., Roy, H.K., Backman, V., & Brand, R. (2008). Investigating population risk factors of pancreatic cancer by evaluation of optical markers in the duodenal mucosa. DISEASE MARKERS, 25(6), 313-321.Hindawi Limited. doi: 10.1155/2008/958214.

Turzhitsky, V.M., Gomes, A.J., Kim, Y.L., Liu, Y., Kromine, A., Rogers, J.D., Jameel, M., Roy, H.K., & Backman, V. (2008). Measuring mucosal blood supply in vivo with a polarization-gating probe. APPLIED OPTICS, 47(32), 6046-6057.Optica Publishing Group. doi: 10.1364/AO.47.006046.

Allen, J., Liu, Y., Kim, Y.L., Turzhitsky, V.M., Backman, V., & Ameer, G.A. (2007). Spectroscopic translation of cell-material interactions. BIOMATERIALS, 28(2), 162-174.Elsevier BV. doi: 10.1016/j.biomaterials.2006.07.002.

Figueiredo, R.J., Backman, V., Liu, Y., & Paladugula, J. (2007). Architecture and performance of a grid-enabled lookup-based biomedical optimization application: Light scattering spectroscopy. IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE, 11(2), 170-178.Institute of Electrical and Electronics Engineers (IEEE). doi: 10.1109/TITB.2006.876032.

Liu, Y., Brand, R.E., Turzhitsky, V., Kim, Y.L., Roy, H.K., Hasabou, N., Sturgis, C., Shah, D., Hall, C., & Backman, V. (2007). Optical markers in duodenal mucosa predict the presence of pancreatic cancer. CLINICAL CANCER RESEARCH, 13(15), 4392-4399.American Association for Cancer Research (AACR). doi: 10.1158/1078-0432.CCR-06-1648.

Roy, H.K., Wali, R.K., Kim, Y., Liu, Y., Hart, J., Kunte, D.P., Koetsier, J.L., Goldberg, M.J., & Backman, V. (2007). Inducible nitric oxide synthase (iNOS) mediates the early increase of blood supply (EIBS) in colon carcinogenesis. FEBS LETTERS, 581(20), 3857-3862.Wiley. doi: 10.1016/j.febslet.2007.07.012.

Subramanian, H., Pradhan, P., Kim, Y.L., & Backman, V. (2007). Penetration depth of low-coherence enhanced backscattered light in subdiffusion regime. PHYSICAL REVIEW E, 75(4), 041914.American Physical Society (APS). doi: 10.1103/PhysRevE.75.041914.

Gong, J.M., Liu, B., Kim, Y.L., Liu, Y., Li, X., & Backman, V. (2006). Optimal spectral reshaping for resolution improvement in optical coherence tomography. OPTICS EXPRESS, 14(13), 5909-5915.Optica Publishing Group. doi: 10.1364/OE.14.005909.

Kim, Y.L., Pradhan, P., Kim, M.H., & Backman, V. (2006). Circular polarization memory effect in low-coherence enhanced backscattering of light. OPTICS LETTERS, 31(18), 2744-2746.Optica Publishing Group. doi: 10.1364/OL.31.002744.

Kim, Y.L., Pradhan, P., Subramanian, H., Liu, Y., Kim, M.H., & Backman, V. (2006). Origin of low-coherence enhanced backscattering. OPTICS LETTERS, 31(10), 1459-1461.Optica Publishing Group. doi: 10.1364/OL.31.001459.

Kim, Y.L., Turzhitsky, V.M., Liu, Y., Roy, H.K., Wali, R.K., Subramanian, H., Pradhan, P., & Backman, V. (2006). Low-coherence enhanced backscattering: review of principles and applications for colon cancer screening. JOURNAL OF BIOMEDICAL OPTICS, 11(4), 041125.SPIE-Intl Soc Optical Eng. doi: 10.1117/1.2236292.

Roy, H.K., Kim, Y.L., Liu, Y., Wali, R.K., Goldberg, M.J., Turzhitsky, V., Horwitz, J., & Backman, V. (2006). Risk stratification of colon carcinogenesis through enhanced backscattering spectroscopy analysis of the uninvolved colonic mucosa. CLINICAL CANCER RESEARCH, 12(3), 961-968.American Association for Cancer Research (AACR). doi: 10.1158/1078-0432.CCR-05-1605.

Roy, H.K., Kunte, D.P., Koetsier, J.L., Hart, J., Kim, Y.L., Liu, Y., Bissonnette, M., Goldberg, M., Backman, V., & Wali, R.K. (2006). Chemoprevention of colon carcinogenesis by polyethylene glycol:: suppression of epithelial proliferation via modulation of SNAIL/β-catenin signaling. MOLECULAR CANCER THERAPEUTICS, 5(8), 2060-2069.American Association for Cancer Research (AACR). doi: 10.1158/1535-7163.MCT-06-0054.

Subramanian, H., Pradhan, P., Kim, Y.L., Liu, Y., Li, X., & Backman, V. (2006). Modeling low-coherence enhanced backscattering using Monte Carlo simulation. APPLIED OPTICS, 45(24), 6292-6300.Optica Publishing Group. doi: 10.1364/AO.45.006292.

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