Pitt | Swanson Engineering
Bibby, Kyle J
Civil & Environmental Engr

Ph.D. in Environmental Engineering, Yale University, 2012

M.Phil. in Environmental Engineering, Yale University, 2010

M.S. in Environmental Engineering, Yale University, 2009

B.S. in Civil Engineering and Geological Sciences, University of Notre Dame, 2008

(2010) EPA Science to Achieve Results (STAR) Graduate Research Fellowship.

(2009) Environmental Research and Education Foundation Graduate Research Fellowship.

(2008) Yale University School of Engineering and Applied Science Goodyear Fellowship.

(2007) ACS Undergraduate Award in Environmental Chemistry.

(2007) Tau Beta Pi and Chi Epsilon Honor Societies.

(2006) Notre Dame Energy Center Sloan Undergraduate Research Fellowship.

Ma, X., Baron, J.L., Vikram, A., Stout, J.E., and Bibby, K.J., 2015, "Fungal diversity and presence of potentially pathogenic fungi in a hospital hot water system treated with on-site monochloramine," Water Research, vol.71, pp. 197-206.

Stephens, B.S., Adams, R.I., Bhangar, S., Bibby, K.J., and Waring, M.S., 2015, "From commensalism to mutualism: Integrating the microbial ecology, building science, and indoor air communities to advance research on the indoor microbiome," Indoor Air, vol.25, no.1, pp. 1-3.

Bibby, K.J., 2014, "Improved Bacteriophage Genome Data is Necessary for Integrating Viral and Bacterial Ecology," Microbial Ecology, vol.67, no.2, pp. 242-244.

Baron, J.L., Vikram, A., Duda, S., Stout, J.E., and Bibby, K.J., 2014, "Shift in the microbial ecology of a hospital hot water system following the introduction of an on-site monochloramine disinfection system," PLoS ONE, vol.9, no.7.

Good, M., Sodhi, C.P., Ozolek, J.A., Buck, R.H., Goehring, K.C., Thomas, D.L., Vikram, A., Bibby, K.J., Morowitz, M.J., Firek, B.A., Lu, P., and Hackam, D.J., 2014, "Lactobacillus rhamnosus HN001 decreases the severity of necrotizing enterocolitis in neonatal mice and preterm piglets: Evidence in mice for a role of TLR9," American Journal of Physiology - Gastrointestinal and Liver Physiology, vol.306, no.11, G1021-G1032.

Larson, L.N., Sánchez España, J.M., Kaley, B., Sheng, Y., Bibby, K.J., and Burgos, W.D., 2014, "Thermodynamic controls on the kinetics of microbial low-pH Fe(II) oxidation," Environmental Science and Technology, vol.48, no.16, pp. 9246-9254.

Mohan, A.M., Bibby, K.J., Lipus, D., Hammack, R.W., and Gregory, K.B., 2014, "The functional potential of microbial communities in hydraulic fracturing source water and produced water from natural gas extraction characterized by metagenomic sequencing," PLoS ONE, vol.9, no.10.

Vikram, A., Lipus, D., and Bibby, K.J., 2014, "Produced water exposure alters bacterial response to biocides," Environmental Science and Technology, vol.48, no.21, pp. 13001-13009.

Yamamoto, N., and Bibby, K.J., 2014, "Clustering of fungal community internal transcribed spacer sequence data obscures taxonomic diversity," Environmental Microbiology, vol.16, no.8, pp. 2491-2500.

Yamamoto, N., Dannemiller, K.C., Bibby, K.J., and Peccia, J.L., 2014, "Identification accuracy and diversity reproducibility associated with internal transcribed spacer-based fungal taxonomic library preparation," Environmental Microbiology, vol.16, no.9, pp. 2764-2776.

Bibby, K., 2013, "Metagenomic identification of viral pathogens.," Trends in biotechnology, vol.31, no.5, pp. 275-9.

Bibby, K., and Peccia, J., 2013, "Identification of viral pathogen diversity in sewage sludge by metagenome analysis.," Environmental science & technology, vol.47, no.4, pp. 1945-51.

Murali Mohan, A., Hartsock, A., Bibby, K.J., Hammack, R.W., Vidic, R.D., and Gregory, K.B., 2013, "Microbial community changes in hydraulic fracturing fluids and produced water from shale gas extraction," Environmental Science and Technology, vol.47, no.22, pp. 13141-13150.

Rismani-Yazdi, H., Carver, S.M., Christy, A.D., Yu, Z., Bibby, K., Peccia, J., and Tuovinen, O.H., 2013, "Suppression of methanogenesis in cellulose-fed microbial fuel cells in relation to performance, metabolite formation, and microbial population.," Bioresource technology, vol.129, pp. 281-8.

Hospodsky, D., Qian, J., Nazaroff, W.W., Yamamoto, N., Bibby, K., Rismani-Yazdi, H., and Peccia, J., 2012, "Human occupancy as a source of indoor airborne bacteria.," PloS one, vol.7, no.4, e34867.

Wong, K., Fong, T.T., Bibby, K., and Molina, M., 2012, "Application of enteric viruses for fecal pollution source tracking in environmental waters.," Environment international, vol.45, pp. 151-64.

Yamamoto, N., Bibby, K., Qian, J., Hospodsky, D., Rismani-Yazdi, H., Nazaroff, W.W., and Peccia, J., 2012, "Particle-size distributions and seasonal diversity of allergenic and pathogenic fungi in outdoor air.," The ISME journal, vol.6, no.10, pp. 1801-11.

Yates, M.D., Kiely, P.D., Call, D.F., Rismani-Yazdi, H., Bibby, K., Peccia, J., Regan, J.M., and Logan, B.E., 2012, "Convergent development of anodic bacterial communities in microbial fuel cells.," The ISME journal, vol.6, no.11, pp. 2002-13.

Bibby, K., and Peccia, J., 2011, "Next Generation DNA Sequencing Identifies Pathogens in Biosolids," Association of Environmental Engineering and Science Professors, Tampa, FL.

Bibby, K., and Peccia, J., 2011, "Next Generation DNA Sequencing Identifies Pathogens in Biosolids," Environmental, Washington DC.

Bibby, K., Viau, E., and Peccia, J., 2011, "Viral metagenome analysis to guide human pathogen monitoring in environmental samples.," Letters in applied microbiology, vol.52, no.4, pp. 386-92.

Peccia, J., Hospodsky, D., and Bibby, K., 2011, "New Directions: A revolution in DNA sequencing now allows forthe meaningful integration of biology with aerosol science," Atmospheric Environment, vol.45, no.10, pp. 1896-1897.

Rismani-Yazdi, H., Haznedaroglu, B.Z., Bibby, K., and Peccia, J., 2011, "Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: pathway description and gene discovery for production of next-generation biofuels.," BMC genomics, vol.12, p. 148.

Viau, E., Bibby, K., Paez-Rubio, T., and Peccia, J., 2011, "Toward a consensus view on the infectious risks associated with land application of sewage sludge.," Environmental science & technology, vol.45, no.13, pp. 5459-69.

Bibby, K., Viau, E., and Peccia, J., 2010, "454 Pyrosequencing Identification of Bacterial Pathogens in Biosolids,Agricultural Residuals, and Soil," New England Water Environment Association, Boston, MA.

Bibby, K., Viau, E., and Peccia, J., 2010, "Next Generation DNA Sequencing Identifies Pathogens in Biosolids," Water Environment Federation Technical Exhibition and Conference, New Orleans, LA.

Bibby, K., Viau, E., and Peccia, J., 2010, "Next Generation DNA Sequencing Reveals Viral Diversity in Biosolids," American Chemical Society, Boston, MA.

Bibby, K., Viau, E., and Peccia, J., 2010, "Pyrosequencing of the 16S rRNA gene to reveal bacterial pathogen diversity in biosolids.," Water research, vol.44, no.14, pp. 4252-60.

Downing, L.S., Bibby, K.J., Esposito, K., Fascianella, T., Tsuchihashi, R., and Nerenberg, R., 2010, "Nitrogen removal from wastewater using a hybrid membrane-biofilm process: pilot-scale studies.," Water environment research : a research publication of the Water Environment Federation, vol.82, no.3, pp. 195-201.

Ziemba, C., Bibby, K., and Peccia, J., 2009, "New England Biosolids and Residuals Association," North Haven, CT.

Downing, L., Bibby, K., Esposito, K., Fascianella, T., and Nerenberg, R., 2008, "Pilot-Scale Testing of theHybrid Membrane Biofilm Process (HMBP) for Total Nitrogen Removal from Municipal Wastewater," Water Environment Federation Technical Exhibition and Conference, Chicago, IL.

Downing, L.S., Bibby, K., Fascianella, T., Esposito, K., and Nerenberg, R., 2008, "The Hybrid MembraneBiofilm Process for TN Removal from Wastewater: Bench and Pilot Scale Studies," Environmental and Water Resources Institute World Environmental & Water Resources Congress, Honolulu, HI.

Nerenberg, R., Downing, L., Bibby, K., Esposito, K., and Fascianella, T., 2008, "A hybrid membrane-biofilmprocess for concurrent nitrification and denitrification: bench and pilot-scale studies," International Water Association North American Membranes Research Conference, Amherst, MA.