Pitt | Swanson Engineering
Banerjee, Ipsita
Chem/Petroleum Engineering, Bioengineering Department
Banerjee, Ipsita
Faculty
Associate Professor
Office: 930 Benedum Hall
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Ph.D. in Chemical and Biochemical Engineering, Rutgers University, 2005

MS in Chemical Engineering, Indian Institute of Science, 1998

BChE in Chemical Engineering, Jadavpur University, 1996

(2012) Selected for NAE Frontiers of Engineering Education Symposium.

(2009) NIH Director's New Innovator Award.

(2009) ORAU Ralph E. Powe Junior Faculty Award.

(2004) University and Bevier Fellowship for excellence in graduate research, Rutgers University, New Jersey.

(2003) Johnson & Johnson Fellowship.

(2000) Graduate Fellowship, Rutgers University, New Jersey.

(1998) Kulloor Memorial Award for best student in Chemical Engineering, Indian Institute of Science, Bangalore, India.

(1996) Graduate Fellowship, Indian Institute of Science, Bangalore, India.

Banerjee, I., Maiti, S., and Task, K., 2012, "A Genetic Network Identification Algorithm Combining Experiment and Computation," in Computational Biology of Embryonic Stem Cells, Bentham Scientific.

Chemmangattavalippil, N., Task, K., and Banerjee, I., 2012, "An Integer Optimization Algorithm for Robust Identification of Non-linear Gene Regulatory Networks," BMC Systems Biology, vol.2, no.6, p. 119.

Jaramillo, M., and Banerjee, I., 2012, "Endothelial Cell Co-Culture Mediates Maturation of Human Embryonic Stem Cell to Pancreatic Insulin Producing Cells in a Directed Differentiation Approach," J Vis Expt., vol.27, doi: 10.3791/3759.

Jaramillo, M., Singh, S., Velankar, S., Kumta, P., and Banerjee, I., 2012, "Inducing Endoderm Differentiation by Modulating Mechanical Properties of Soft Substrates," J. Tissue Eng. Regen. Med., doi:10.1002/term.1602.

Mathew, S., Jaramillo, M., Zhang, X., Zhang, L.A., and Banerjee, I., 2012, "Analysis of Alternative Pathways of Endoderm Induction of Human Embryonic Stem Cells Identifies Context Specific Differences," BMC Systems Biology, vol.15, no.6, p. 154.

Task, K., Jaramillo, M., and Banerjee, I., 2012, "Population Based Model of Human Embryonic Stem Cell (hESC) Differentiation during Endoderm Induction," PLoS One, vol.7, no.e32975.

Zhang, X., Jaramillo, M., Singh, S., Kumta, P., and Banerjee, I., 2012, "Analysis of Regulatory Network Involved in Mechanical Induction of Embryonic Stem Cell Differentiation," PLoS One, vol.7, no.e35700.

Banerjee, I., and Yarmush, M., 2011, "Impact of Co-culture on Pancreatic Differentiation of Embryonic Stem Cells," Tissue Engineering and Regenerative Medicine, vol.5, pp. 313-323.

Candiello, J., Jaramillo, M., Kia-Goh, S., and Banerjee, I., 2011, "Role of Substrates in Diabetes Therapy: Stem Cell Differentiation and Islet Transplantation," Critical Reviews in Biomedical Research, vol.39, pp. 535-555.

Banerjee, I., and Yarmush, M., 2010, "Impact of Co-culture on Pancreatic Differentiation of Embryonic Stem Cells," Tissue Engineering and Regenerative Medicine, DOI: 10.1002/term.

Banerjee, I., Maiti, S., Parashurama, N., and Yarmush, M., 2010, "Uncovers the Regulatory Architecture in Differentiating Embryonic Stem Cells," Bioinformatics, vol.26, pp. 1332-1339.

Banerjee, I., Pal, S., and Maiti, S., 2010, "Computationally Efficient Black Box Modeling for Feasibility Analysis," Computers and Chemical Engineering, vol.34, pp. 1515-1521.

Barua, S., Linton, R.S., Gamboa, J., Banerjee, I., Yarmush, M.L., and Rege, R., 2010, "Lytic Peptide-mediated sensitization of TRAIL-resistant prostate cancer cells to death receptor agonists," Cancer Letters, vol.293, pp. 240-253.

Song, Q., Saygili, B., Banerjee, I., Zhang, Q., Berthiaume, F., and Yarmush, M., 2009, "Low Power Laser Irradiation Stimulates the Proliferation of Adult Human Retinal Pigmented Epithelial Cells in Culture," Cellular and Molecular Bioengineering, vol.2, pp. 87-103.

Banerjee, I., and Ierapetrictou, M.G., 2008, "Shape Reconstruction Methods for Nonconvex Feasibility Analysis," in Encyclopedia of Optimization, 2nd Edition, Springer.

Banerjee, I., and Ierapetritou, M.G., 2006, "An Adaptive Reduction Scheme to Model Reactive Flow," Combustion & Flame, vol.144, pp. 619-633.

Banerjee, I., and Ierapetritou, M.G., 2005, "A Novel Feasibility Analysis Approach Based on Dimensionality Reduction and Shape Reconstruction," CM-017, p. 85, Barcelona, Spain.

Banerjee, I., and Ierapetritou, M.G., 2005, "An Adaptive Reduction Scheme to Develop Flexible Reduced Chemistry Models for Reactive Flow Simulations," MS-036, p. 247, Barcelona, Spain.

Banerjee, I., and Ierapetritou, M.G., 2005, "Feasibility Evaluation of Nonconvex Systems using Shape Reconstruction Techniques," Industrial & Engineering Chemistry Research, vol.44, pp. 3638-3647.

Banerjee, I., and Ierapetritou, M.G., 2004, "An Adaptive Chemistry Scheme to Develop Flexible Reduced Chemistry Models for Reactive Flow Simulations," 17th ONR Propulsion Meeting, Los Angeles, MA.

Banerjee, I., and Ierapetritou, M.G., 2004, "Model Independent Parametric Decision Making," Annals of Operations Research, vol.132, pp. 135-155.

Banerjee, I., and Ierapetritou, M.G., 2003, "Development of an Adaptive Chemistry Model Considering Micromixing Effects," Chemical Engineering Science, vol.8, pp. 4537-4555.

Banerjee, I., and Ierapetritou, M.G., 2003, "Process Synthesis under Parameter Variability," Computers & Chemical Engineering, vol.27, pp. 1499-1512.

Banerjee, I., and Ierapetritou, M.G., 2002, "Design Optimization under Parameter Uncertainty for General Black Box Models," Industrial & Engineering Chemistry Research, vol.41, pp. 6687-6697.

Balakrishnan, S., Georgopoulos, P., Banerjee, I., and Ierapetritou, M.G., 2002, "Uncertainty Considerations in the Complex Kinetic Mechanisms Reduction," AIChE J, vol.48, pp. 2875-2889.

Banerjee, I., Modak, J.M., and Bandopadhyay, K., 2001, "Mathematical Model for Evaluation of Mass Transfer Limitations in Phenol Biodegradation by Immobilized," Pseudomonas Putida, Journal of Biotechnology, vol.87, pp. 211-223.

Banerjee, I., 2012, "Biomedical Engineering," Ohio State University, Ohio.

Candiello, J., Richardson, T., Kumta, P., and Banerjee, I., 2012, "Alginate Encapsulated Chitosan Nanoparticles to Promote Endodermal Differentiation of Human Embryonic Stem Cells," AIChE, Pittsburgh.

Candiello, J., Singh, S., Kumta, P., and Banerjee, I., 2012, "Mouse Embryonic Stem Cell Sensitivity to Compliant Alginate Substartes: A Promising Platform for Endoderm Leaning Differentiation," AIChE, Pittsburgh.

Candiello, J., Zhang, L.A., Kumta, P., and Banerjee, I., 2012, "Exploring Structural Variations of Cytoskeleton to Understand hESC Differentiation to Insulin Producing Phenotype," AIChE, Pittsburgh.

Goh, S.K., Bertera, S., and Banerjee, I., 2012, "Perfusion-decellularization of Pancreas as a Scaffold for the Differentiation of Human Embryonic Stem Cells into Insulin-Producing Cells," Biological Scaffold Symposium, Napa Valley.

Goh, S.K., Bertera, S., and Banerjee, I., 2012, "Perfusion-decellularization of Pancreas as a Scaffold for the Differentiation of Human Embryonic Stem Cells into Insulin-Producing Cells," ISSCR, Yokohama.

Goh, S.K., Bertera, S., Olsen, P., Yang, L., and Banerjee, I., 2012, "Whole Organ 3D Microenvironment as a Regulatory Cue for Pancreatic Differentiation of Embryonic Stem Cells," AIChE, Pittsburgh.

Jaramillo, M., and Banerjee, I., 2012, "Endothelial Cell Co-Culture Mediates Maturation of Human Embryonic Stem Cell (HESC) derived Pancreatic Progenitor to Insulin Expressing Cells," ISSCR, Yokohama.

Jaramillo, M., Mathew, S., and Banerjee, I., 2012, "Pathway of Endoderm Commitment plays a Significant Role in Pancreatic Maturation of Human Embryonic Stem Cells," ISSCR, Yokohama.

Mathew, S., and Banerjee, I., 2012, "Global Sensitivity Analysis of Insulin Mediated PI3K/ AKT Pathway in Human Embryonic Stem Cells," AIChE, Pittsburgh.

Richardson, T., Kumta, P., and Banerjee, I., 2012, "Alginate Encapsulation and Differentiation of Human Embryonic Stem Cells to Islet Cell Types," AIChE, Pittsburgh.

Task, K., and Banerjee, I., 2012, "Analyzing the Dynamics of ESC Cell Cycle Transition through an Integrated Experimental and Modeling Approach," AIChE, Pittsburgh.

Task, K., D'Amour, A., Singh, S., Jaramillo, M., Kumta, P., and Banerjee, I., 2012, "Correlating effects of gel microstructural features with specific differentiation patterning of embryonic stem cells," ISSCR, Yokohama.

Task, K., Kumta, P., and Banerjee, I., 2012, "Correlating effects of gel microstructural features with specific differentiation patterning of embryonic stem cells," AIChE Annual Meeting, Minneapolis.

Task, K., Kumta, P., and Banerjee, I., 2012, "Correlating Effects of Gel Microstructural Features with Specific Differentiation Patterning of Mouse Embryonic Stem Cells," AIChE, Pittsburgh.

Banerjee, I., 2011, "Chemical and Life Science Engineering," Virginia Commonwealth University, Virginia.

Banerjee, I., 2011, "Keynote lecture," Northeast Bioengineering Conference, Rensselaer Polytechnic Institute.

Goh, S.K., Bertera, S., and Banerjee, I., 2011, "Perfusion-decellularization of Pancreatic Matrix - A Scaffold for Bioengineered Pancreas," AIChE Annual Meeting, Minneapolis.

Goh, S.K., Bertera, S., and Banerjee, I., 2011, "Perfusion-decellularization of Pancreatic Matrix - A Scaffold for Bioengineered Pancreas," BMES, Connecticut.

Jaramillo, M., and Banerjee, I., 2011, "Effect of Early Endoderm Induction in Late Stage Islet Maturation," ACS Spring Meeting, Anaheim.

Jaramillo, M., and Banerjee, I., 2011, "Effect of Endothelial Cell Co-Culture on Maturation oh Human Embryonic Stem Cells to Pancreatic Islet-Like Cells," ISSCR, Toronto.

Jaramillo, M., and Banerjee, I., 2011, "Endothelial Cell Co-Culture Helps Maturation of Human Embryonic Stem Cell (HESC) to Pancreatic Islet-Like Cell," AIChE Annual Meeting, Minneapolis.

Mathew, S., Jaramillo, M., and Banerjee, I., 2011, "Analyzing Pathways of Endoderm Induction of hESC by Identification of Co-Regulated Genes," AIChE Annual Meeting, Minneapolis.

Task, K., and Banerjee, I., 2011, "Population based model of human embryonic stem cell differentiation during endoderm induction," BMES, Connecticut.

Zhang, X., Jaramillo, M., and Banerjee, I., 2011, "Biclustering Algorithm in Deciphering Mechanical Induction of ESC towards Endoderm," ACS Spring Meeting, Anaheim.

Banerjee, I., 2010, "Differentiating Embryonic Stem Cells from an Engineering Perspective," Chemical Engineering Department, Auburn University, Alabama.

Banerjee, I., 2010, "Differentiating Embryonic Stem Cells: A Bioengineering Perspective," Department of Bioengineering, University of Pittsburgh, PA.

Banerjee, I., 2010, "Embryonic Stem Cell Differentiation through an Integrated Experimental and Theoretical Approach," Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine.

Banerjee, I., 2010, "From Stem Cell to Pancreas: Can we cure Diabetes?," Science 2010 Transformations, Pittsburgh, PA.

Banerjee, I., 2010, "Pancreatic Differentiation of Embryonic Stem Cells," Cellular Approaches to Tissue Engineering and Regeneration (CATER) seminar series, University of Pittsburgh School of Medicine.

Jaramillo, M., and Banerjee, I., 2010, "Effect of Early Endoderm Induction in Late Stage Islet Maturation," BMES, Austin.

Jaramillo, M., and Banerjee, I., 2010, "Optimization of Intermediate Steps of Islet Differentiation Protocol for Human Embryonic Stem Cells," AIChE Annual Meeting, Salt Lake City.

Jaramillo, M., and Banerjee, I., 2010, "Role of Substrate Stiffness on ESC Differentiation into Endoderm Lineage," AIChE Annual Meeting, Salt Lake City.

Task, K., Jaramillo, M., and Banerjee, I., 2010, "Mathematical Modeling of Human Embryonic Stem Cell Differentiation during Endoderm Induction," AIChE Annual Meeting, Salt Lake City.

Banerjee, I., 2009, "An Integer Programming Formulation to Identify the Network Architecture Governing Embryonic Stem Cell Differentiation," AIChE Annual Meeting, Nashville.

Banerjee, I., 2009, "An Integrated Approach for Analyzing Stem Cell Differentiation," Chemical Engineering Department, Rutgers University, New Jersey.

Banerjee, I., 2009, "Design and Uncertainty: from Combustion Kinetics to Biological Networks," FOCAPD, Foundation of Computer Aided Process Design, Colorado.

Banerjee, I., 2009, "Determining Regulatory Networks Governing the Differentiation of Embryonic Stem Cells to Pancreatic Lineage," APS Meeting, Pittsburgh.

Banerjee, I., 2009, "Directed Differentiation of Embryonic Stem Cells towards Insulin-producing Pancreatic Cells," Midwest Tissue Engineering Conference, Pittsburgh.

Banerjee, I., 2009, "Mathematical Modeling of Reaction Networks," Simulation and Modeling, University of Pittsburgh, Pittsburgh, PA.

Jaramillo, M., Singh, S., Kumta, P., and Banerjee, I., 2009, "Role of Substrate Stiffness Modulation in Controlling Morphology and Differentiation of Embryonic Stem Cells," AIChE Annual Meeting, Nashville.

Jaramillo, M., Singh, S., Kumta, P., and Banerjee, I., 2009, "Substrate Stiffness Modulates Differentiation of Embryonic Stem Cells," BMES, Pittsburgh.

Banerjee, I., and Yarmush, M., 2008, "Directed Differentiation of Embryonic Stem Cells towards Insulin-producing Pancreatic Cells," AIChE Annual Meeting, Philadelphia.

Banerjee, I., Maiti, S., and Yarmush, M., 2008, "Determining Regulatory Networks for the Differentiation of Embryonic Stem Cells to Pancreatic Lineage," BMES, St. Louis.

Banerjee, I., Maiti, S., and Yarmush, M., 2008, "Determining Regulatory Networks Governing the Differentiation of Embryonic Stem Cells to Pancreatic Lineage," AIChE Annual Meeting, Philadelphia.

Banerjee, I., Tilles, A.W., and Yarmush, M., 2007, "Directed Differentiation of Embryonic Stem Cells towards Insulin-Producing Cells," AIChE Annual Meeting, Salt Lake City.

Banerjee, I., 2005, "A Framework for Adaptive Kinetic Model Reduction for Combustion," Engineering and Process Chemistry Meeting, ExxonMobil, New Jersey.

Banerjee, I., 2005, "Development of an Adaptive Framework for Dimension Reduction of Complex Reaction Networks," Computational and Mathematical Biotechnology Lab, Northwestern University, Evanston.

Banerjee, I., and Ierapetritou, M.G., 2005, "A Novel Feasibility Analysis Approach Based on Dimensionality Reduction and Shape Reconstruction," ESCAPE 15, Barcelona, Spain.

Banerjee, I., and Ierapetritou, M.G., 2005, "An Adaptive Reduction Scheme to Develop Flexible Reduced Chemistry Models for Reactive Flow Simulations," ESCAPE 15, Barcelona, Spain.

Banerjee, I., and Ierapetritou, M.G., 2005, "Development of Adaptive Chemistry Model for Combustion Simulation," ACS Mid Atlantic Regional Meeting, New Jersey.

Banerjee, I., Ierapetritou, M.G., Androulakis, I.P., and Huynh, T.P., 2005, "A New Adaptive Representation of Complex Kinetic Models," AIChE Annual Meeting, Cincinnati.

Banerjee, I., 2004, "An Adaptive Chemistry Reduction Scheme for Reactive Flow Simulation," CPPG Seminar, Princeton Plasma Physics Laboratory, New Jersey.

Banerjee, I., 2004, "An Adaptive Framework for Dimension Reduction of Kinetic Models," PICASso Computational Seminars, Princeton University, New Jersey.

Banerjee, I., and Ierapetritou, M.G., 2004, "An Adaptive Reduction Scheme to Develop Flexible Reduced Chemistry Models for Reactive Flow Simulations," FOCAPD, Princeton.

Banerjee, I., and Ierapetritou, M.G., 2004, "CFD Modeling of Combustion Systems using an Adaptive Chemistry Scheme," AIChE Annual Meeting, Austin.

Banerjee, I., and Ierapetritou, M.G., 2004, "Feasibility Evaluation of Non-convex Systems using Shape Reconstruction Technique," AIChE Annual Meeting, Austin.

Banerjee, I., and Ierapetritou, M.G., 2003, "A Framework for Coupling Adaptively Reduced Chemistry with Detailed Flow Field Models," AIChE Annual Meeting, San Francisco.

Banerjee, I., and Ierapetritou, M.G., 2003, "Adaptive Chemistry Model Development for Combustion," 16th ONR Propulsion Meeting, Los Angeles, CA.

Banerjee, I., and Ierapetritou, M.G., 2002, "Adaptive Kinetic Model Reduction Considering Micromixing Effects," AIChE Annual Meeting, Indianapolis.

Banerjee, I., and Ierapetritou, M.G., 2002, "Design Optimization under Parameter Uncertainty for General Black Box Models," AIChE Annual Meeting, Indianapolis.

Balakrishnan, S., Banerjee, I., and Ierapetritou, M.G., 2001, "Coping with Uncertainty in the Description of Complex Kinetic Mechanisms," AIChE Annual Meeting, Reno.